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single cell rnaseq data  (Medicago)

 
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    Medicago single cell rnaseq data
    Single Cell Rnaseq Data, supplied by Medicago, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/rnaseq+data/cell+program+single+transcriptome/pm42244149-447-0-4
    Average 86 stars, based on 1 article reviews
    single cell rnaseq data - by Bioz Stars, 2026-10
    86/100 stars

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    Related Articles

    RNA sequencing:

    Article Title: MtExpress, a Comprehensive and Curated RNAseq-based Gene Expression Atlas for the Model Legume Medicago truncatula.
    Article Snippet: .. Results Retrieval, quality checking and organization of RNAseq data To build MtExpress, RNAseq data (i.e. sequenced reads and fastq) generated from Medicago were downloaded from the Sequence Read Archive (SRA) and the European Nucleotide Archive (ENA) (Fig. 1), along with associated metadata. ..

    Article Title: Medicago truncatula SOC1 Genes Are Up-regulated by Environmental Cues That Promote Flowering
    Article Snippet: .. To determine whether the Group A and B SOC1 genes also have distinct patterns of expression in other plants, we first examined available RNAseq data from Medicago sativa (The Alfalfa Gene Index and Expression Atlas Database ). ..

    Article Title: The Rhizophagus irregularis permease RiFTR1 functions without a ferroxidase partner for reductive iron transport.
    Article Snippet: .. To gain further insight into its precise localization, RiFTR1 expression levels were investigated using in silico analysis of RNASeq data generated from ERM grown in monoxenic cultures and from laser microdissected Medicago truncatula root cells containing intraradical hyphae or arbuscules43,44. ..

    Article Title: Small peptide signaling pathways modulating macronutrient utilization in plants.
    Article Snippet: Root system architecture (RSA) and physiological functions define macronutrient uptake efficiency.. Small signaling peptides (SSPs), that act in manners similar to hormones, and their cognate receptors transmit signals both locally and systemically.. Several SSPs controlling morphological and physiological traits of roots have been identified to be associated with macronutrient uptake.

    Generated:

    Article Title: MtExpress, a Comprehensive and Curated RNAseq-based Gene Expression Atlas for the Model Legume Medicago truncatula.
    Article Snippet: .. Results Retrieval, quality checking and organization of RNAseq data To build MtExpress, RNAseq data (i.e. sequenced reads and fastq) generated from Medicago were downloaded from the Sequence Read Archive (SRA) and the European Nucleotide Archive (ENA) (Fig. 1), along with associated metadata. ..

    Article Title: The Rhizophagus irregularis permease RiFTR1 functions without a ferroxidase partner for reductive iron transport.
    Article Snippet: .. To gain further insight into its precise localization, RiFTR1 expression levels were investigated using in silico analysis of RNASeq data generated from ERM grown in monoxenic cultures and from laser microdissected Medicago truncatula root cells containing intraradical hyphae or arbuscules43,44. ..

    Sequencing:

    Article Title: MtExpress, a Comprehensive and Curated RNAseq-based Gene Expression Atlas for the Model Legume Medicago truncatula.
    Article Snippet: .. Results Retrieval, quality checking and organization of RNAseq data To build MtExpress, RNAseq data (i.e. sequenced reads and fastq) generated from Medicago were downloaded from the Sequence Read Archive (SRA) and the European Nucleotide Archive (ENA) (Fig. 1), along with associated metadata. ..

    Expressing:

    Article Title: Medicago truncatula SOC1 Genes Are Up-regulated by Environmental Cues That Promote Flowering
    Article Snippet: .. To determine whether the Group A and B SOC1 genes also have distinct patterns of expression in other plants, we first examined available RNAseq data from Medicago sativa (The Alfalfa Gene Index and Expression Atlas Database ). ..

    Article Title: The Rhizophagus irregularis permease RiFTR1 functions without a ferroxidase partner for reductive iron transport.
    Article Snippet: .. To gain further insight into its precise localization, RiFTR1 expression levels were investigated using in silico analysis of RNASeq data generated from ERM grown in monoxenic cultures and from laser microdissected Medicago truncatula root cells containing intraradical hyphae or arbuscules43,44. ..

    In Silico:

    Article Title: The Rhizophagus irregularis permease RiFTR1 functions without a ferroxidase partner for reductive iron transport.
    Article Snippet: .. To gain further insight into its precise localization, RiFTR1 expression levels were investigated using in silico analysis of RNASeq data generated from ERM grown in monoxenic cultures and from laser microdissected Medicago truncatula root cells containing intraradical hyphae or arbuscules43,44. ..

    other:

    Article Title: Medicago truncatula resources to study legume biology and symbiotic nitrogen fixation
    Article Snippet: The array data from Mt- EA and RNAseq data are also housed at ( https://medicago. oulouse.inrae.fr/MtExpress ).



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    Image Search Results


    Co-cultures of GFP2-Display-expressing HIV-1-infected (NLCI JRFL Env) A3.01 cells and GFP1-Display- and CCR5-expressing A3R5.7 target cells were surface-stained for the proteins shown and analyzed by spectral flow cytometry on a Cytek Aurora instrument. Live cells were identified and gated for infection using the mCherry reporter and syncytia were identified as mCherry+GFP+. The values corresponding to each surface protein of interest were normalized to cell size by dividing by the forward scatter height (FSC-H) parameter. (A) UMAP analysis was performed on the resulting datasets, excluding mCherry and GFP so as to not bias the clustering of cell subsets. In other words, the UMAP algorithm was given no information on which cells were uninfected, infected mononucleated, or syncytia. (B) Histograms of each surface protein stained for in the panels, with each cell subset shown as separate overlays. ( C ) Differential gene expression analysis of isolated syncytia VS and isolated infected mononucleated cells. Shown in yellow are genes involved in inflammatory responses and apoptosis. (RNAseq analyses performed by Plasmidsaurus for C ).

    Journal: bioRxiv

    Article Title: HIV-1-induced small T cell syncytia: susceptibility to direct NK cell killing

    doi: 10.64898/2026.06.14.732158

    Figure Lengend Snippet: Co-cultures of GFP2-Display-expressing HIV-1-infected (NLCI JRFL Env) A3.01 cells and GFP1-Display- and CCR5-expressing A3R5.7 target cells were surface-stained for the proteins shown and analyzed by spectral flow cytometry on a Cytek Aurora instrument. Live cells were identified and gated for infection using the mCherry reporter and syncytia were identified as mCherry+GFP+. The values corresponding to each surface protein of interest were normalized to cell size by dividing by the forward scatter height (FSC-H) parameter. (A) UMAP analysis was performed on the resulting datasets, excluding mCherry and GFP so as to not bias the clustering of cell subsets. In other words, the UMAP algorithm was given no information on which cells were uninfected, infected mononucleated, or syncytia. (B) Histograms of each surface protein stained for in the panels, with each cell subset shown as separate overlays. ( C ) Differential gene expression analysis of isolated syncytia VS and isolated infected mononucleated cells. Shown in yellow are genes involved in inflammatory responses and apoptosis. (RNAseq analyses performed by Plasmidsaurus for C ).

    Article Snippet: RNAseq analysis was done by Plasmidsaurus and all RNAseq data figures were generated using their online interface.

    Techniques: Expressing, Infection, Staining, Flow Cytometry, Gene Expression, Isolation, RNA sequencing